DNA Damage Atlas

SRX1867524-END-seq-Bcells-ATM-resting

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705517


Source Project ID:   

PRJNA326246

Cell Type:   

B cell


Organism:   

Mus musculus


Genotype:   

ATM-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G0


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003634


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11924537531924546521924540781098+
chr131161927071161934341161929401566.05+
chr121055245161055253271055247491087.14+
chr99542542695426568954259811080.98+
chr169378883193789815937891921182.94+
chr149091088390911723909111951182.32+
chr146916183769162919691623851075.78+
chr135326976453270485532699161210.2+
chr124151489941515695415151191073.21+
chrY4036302403724340366511251.41+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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