DNA Damage Atlas

SRX1867525-END-seq-preB-WT-rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705518


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.008118


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr131161927401161931651161929229122.64+
chr51061766241061770381061767768236.41+
chr121055245851055251231055247555538.56+
chr169378903793789725937892225861.38+
chr59328948893289866932896466338.74+
chr149091103190911431909112198556.44+
chr146916183869162603691620135333.65+
chr184801026248010679480104208207.13+
chr165709007570953857091626364.57+
chrY4036481403690540366699541.36+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1311619274011619314011619292211616+
chrY40364834036905403666911516.7+
chr995425758954261829542592611414+
chr510617664210617703810617677610505.5+
chr1848010286480106794801042010434.7+
chr1490911031909114319091121910274.8+
chr54643576346435999464357699986.39+
chr91153507001153511101153508389696.74+
chr169378905293789571937892229367.25+
chr135326975853270146532699109108.19+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab