DNA Damage Atlas

SRX1867540-END-seq-Bcells-WT-resting

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705558


Source Project ID:   

PRJNA326246

Cell Type:   

B cell


Organism:   

Mus musculus


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G0


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003944


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11924537681924546651924540661016.75+
chr131161925131161934351161929101110.9+
chr91153506001153513491153508381206.77+
chr141125187221125192071125189061053.9+
chr99542567095426236954259692081.57+
chr169378879693789811937892041023.18+
chr14691618376916294969162391941.872+
chr13532696785327050453269928951.165+
chr184801002048010807480104501144.62+
chrY4036523403716440366631631.74+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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