DNA Damage Atlas


SRX1867541-END-seq-preB-LIG4-G1-AsiSI-invitro




Basic Information

Manual

Sample ID:   

SRR3705559


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00075



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr158172964181729644/2815870/
chr38918799989188002/2607560/
chr108040683480406837/2440690/
chr128459045084590453/2342630/
chr3116808386116808389/2260540/
chr74679564246795645/2221700/
chr21899744618997449/2193590/
chr137570811275708115/2153470/
chr5137786946137786949/2132060/
chr1130716976130716979/2120410/
Download the Full Peak List




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