DNA Damage Atlas


SRX1867542-END-seq-preB-LIG4-G1-AsiSI-invivo




Basic Information

Manual

Sample ID:   

SRR3705560


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00052



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/3893470/
chr195352894153528944/3393840/
chr57329285273292855/3323190/
chr12111039091111039094/3207750/
chr159939343499393437/3031970/
chr2156144262156144265/2882170/
chr137570811275708115/2648030/
chr3145989049145989052/2586850/
chr115335176253351765/2518100/
chr4139192791139192794/2447290/
Download the Full Peak List




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