DNA Damage Atlas

SRX1867543-END-seq-preB-LIG4-dilution-experiment-NT

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705561


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002805


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr119245402719245428019245404210938.6+
chr131161927451161931421161929407916.77+
chr51100744801100747161100745046931.77+
chr99542577695426182954259817454+
chr109487214094872372948721546783.34+
chr149091107390911425909112077721.86+
chr54643576546435990464357697017.08+
chr124151504041515347415151257487.09+
chr148006126800635280061457048.56+
chrY4036540403690540366518715.9+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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