DNA Damage Atlas

SRX1867544-END-seq-preB-LIG4-dilution-experiment-no-dilution

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705562


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002238


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr31468117711468133901468126686119.9+
chr31459883761459905641459890495722.75-
chr91214766601214783291214775128440.49-
chr1211103828511103965611103909313557.4+
chr159939218299394425993934367224.5+
chr1375707789757087307570811410528.2+
chr177429508274296266742956506145.52+
chr57329177573293547732928526433.47-
chr115335125053352543533517645736.93+
chr74424629444247292442467966299.82-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab