DNA Damage Atlas

SRX1867545-END-seq-preB-WT-rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705563


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001827


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1311619274011619314011619292213539.2+
chr911535070011535111011535085011460.2+
chr51061766421061771391061767769880.25+
chr995425758954261829542592613784+
chr1693789052937895719378922210964.5+
chr59328948893289866932896468924.87+
chr1490910965909114319091121910294.5+
chr1353269751532701465326993410421.7+
chr546435763464359994643576911705.4+
chrY40364834036905403666913446.9+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1311619274011619314011619292211616+
chrY40364834036905403666911516.7+
chr995425758954261829542592611414+
chr510617664210617703810617677610505.5+
chr1848010286480106794801041410434.7+
chr1490911031909114319091121910274.8+
chr54643576346435999464357699986.39+
chr91153507001153511101153508509696.74+
chr169378905293789571937892229367.25+
chr135326975853270146532699349108.19+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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