DNA Damage Atlas

SRX1867546-END-seq-preB-LIG4-dilution-experiment-1-in-100

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705564


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr131161926621161931421161929345245.24+
chr51061766501061770121061767767529.87+
chr121055245971055249921055247494930.92+
chr99542577595426182954259815838.58+
chr169378904993789540937891925667.43+
chr149091102490911425909112255574.37+
chr135326971853270152532699035156.94+
chr184801027548010676480104325516.62+
chr124151496641515343415151315021.77+
chrY4036498403690540366576821.1+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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