DNA Damage Atlas

SRX1867547-END-seq-preB-LIG4-dilution-experiment-1-in-1000

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705565


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001902


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr131161927421161931421161929287207.09+
chr51061766601061770121061767768646.3+
chr121055246291055249801055247496265.23+
chr99542577195426182954259816560.39+
chr169378905393789540937892286492.5+
chr149091106090911425909112076919.51+
chr135326975153270152532699036267.15+
chr184801027548010675480104266340.23+
chr165709016570940857091627760.52+
chrY4036498403690540366517806.1+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab