DNA Damage Atlas

SRX1867548-END-seq-preB-WT-ATMi-rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705566


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Treatment:   

ATM inhibitor


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.014184


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11924538411924546131924540481653.32+
chr131161927451161932241161929042949.64+
chr91153506741153513461153508321768.9+
chr141125187481125191361125189061808.88+
chr51061765351061770181061767762577.62+
chr99542575195426252954259262840.39+
chr149091098390911589909111892034.58+
chr184801002548010676480104201918.62+
chr124151492541515372415151132356.54+
chrY4036487403690540366393592.7+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY4036487403690540366399107.85+
chr11924538851924542791924540488371.07+
chr99542575195426252954259267824.59+
chr169378905893789540937892167750.26+
chr131161927461161932161161929047665.81+
chr51061766261061770181061767767584.97+
chr124151498141515372415151136925.58+
chr58050072980501125805009015815.55+
chr21950918019509567195093435758.29+
chr149091103790911589909111895746.92+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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