DNA Damage Atlas

SRX1867549-END-seq-preB-LIG4-dilution-experiment-1-in-10000

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705568


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002313


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11924538871924542791924540725349.93+
chr131161927421161931421161929105478.99+
chr51061766381061770181061767766186.54+
chr99542575395426182954259264844.12+
chr169378903893789540937892164860.78+
chr135326976353270152532699035097.4+
chr184801026948010677480104384771.69+
chr124151498541515343415151194507.12+
chr165709004570940557091625881.27+
chrY4036474403690540366395501.86+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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