DNA Damage Atlas

SRX1867550-END-seq-preB-WT-ATMi-rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705567


Source Project ID:   

PRJNA326246

Cell Type:   

Pre-B cell


Organism:   

Mus musculus


Treatment:   

ATM inhibitor


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr119245388519245427919245404813503.4+
chr141192867991192871691192869458318.35+
chr1311619274611619321611619290412325.5+
chr510617662610617705710617677610909.1+
chr109487200894872372948721548141.43+
chr1693789058937895409378921612449.9+
chr58050072980501125805009139350.58+
chr124151498141515446415151139381.57+
chr21950918019509567195093439267.22+
chrY40364754036905403663914214.9+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY4036487403690540366399107.85+
chr11924538851924542791924540488371.07+
chr99542575195426252954259267824.59+
chr169378905893789540937892167750.26+
chr131161927461161932161161929047665.81+
chr51061766261061770181061767767584.97+
chr124151498141515372415151136925.58+
chr58050072980501125805009135815.55+
chr21950918019509567195093435758.29+
chr149091103790911589909112255746.92+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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