DNA Damage Atlas

SRX1867551-END-seq-Bcells-WT-activated

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705569


Source Project ID:   

PRJNA326246

Cell Type:   

B cell


Organism:   

Mus musculus


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.007901


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr131161927421161932321161929345591.04+
chr91153505381153511051153508264150.56+
chr141125187471125191211125189063582.06+
chr51100743331100747161100744863825.25+
chr99542575195426187954259266772.94+
chr169378904093789885937892343238.61+
chr58050070980501124805009014154.76+
chr135326974853270326532699343545.49+
chr184801026248010831480104324130.39+
chrY4036475403723240366453689.68+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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