DNA Damage Atlas

SRX1867552-END-seq-thymus-ATM-rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705570


Source Project ID:   

PRJNA326246

Cell Type:   

Thymus


Organism:   

Mus musculus


Genotype:   

ATM-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.017759


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr514666640514666697314666670060.1749-
chrX143482507143483575143483079121.408-
chr7104427538104428583104428068113.012-
chr1293576289935773589357714048.2568-
chr10722970517229786572297246238.873+
chr871432695714334307143317097.3515-
chrY64533902645341186453411298.5421-
chr1630829398308300003082960646.7062-
chrUn_GL4563961157212569120231628.38-
chrUn_GL456389102261123810680263.717-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512223120234078.95-
chrUn_GL456389102261121910680224.583-
chr10722970517229785272297246174.592+
chrX143482648143483493143483079167.644-
chr7104427538104428233104428068128.315-
chr871432745714333797143317085.9131-
chrY64533902645341176453411274.9506-
chr1293576756935772249357714058.87-
chr270781792707821537078202427.4934-
chr1311060272111060358211060305326.2736+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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