DNA Damage Atlas

SRX1867555-END-seq-thymus-ATM-rep3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705573


Source Project ID:   

PRJNA326246

Cell Type:   

Thymus


Organism:   

Mus musculus


Genotype:   

ATM-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.018683


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482632143483509143483079181.957-
chr1311060267011060358211060304714.2593+
chr710442749310442847510442806742.6336-
chr1293576533935772249357722427.5378-
chr1072297050722978527229723656.5144+
chr1072292962722938137229342119.7947-
chr871432745714335717143317059.8887-
chr1454154003541564625415505322.4568+
chrUn_GL4563961150312223120232380-
chrUn_GL456389100241121910680177.933-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512223120234078.95-
chrUn_GL456389102261121910680224.583-
chr10722970517229785272297236174.592+
chrX143482648143483493143483079167.644-
chr7104427538104428233104428067128.315-
chr871432745714333797143317085.9131-
chrY64533902645341176453411374.9506-
chr1293576756935772249357722458.87-
chr270781792707821537078202427.4934-
chr1311060272111060358211060304726.2736+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab