DNA Damage Atlas

SRX1867556-END-seq-thymus-RAG2-rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705574


Source Project ID:   

PRJNA326246

Cell Type:   

Thymus


Organism:   

Mus musculus


Genotype:   

RAG2-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.119772


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr51466661841466670691466667005.11336-
chrX143482758143483561143483079266.567-
chr131200371511200378121200375559.06038+
chr129357650193577504935771409.96284-
chr99030188790302703903023848.65878-
chrX7659828676599637765991109.74999-
chr871432642714335167143317013.0887-
chr46449748764498430644980586.99314-
chrUn_GL4563961181512527120231776.98-
chrUn_GL45638999371132810680259.816-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512489120231893.82-
chrUn_GL45638999931128110680315.572-
chrX143482758143483522143483079297.204-
chr1312003717112003781212003755510.154+
chrX76598286765995717659911010.139-
chr87143264271433516714331709.00288-
chr46449748764498430644980586.79715-
chr129357652093577504935771406.10135-
chr99030188790302703903023845.64603-
chr64923616149237067492365285.13115+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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