DNA Damage Atlas

SRX1867558-END-seq-thymus-RAG2-rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705619


Source Project ID:   

PRJNA326246

Cell Type:   

Thymus


Organism:   

Mus musculus


Genotype:   

RAG2-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.163598


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482485143483522143483079231.61-
chr131200371711200381201200375557.4514+
chrX1123703991123715351123710125.27331-
chrX7659810476599571765991108.83277-
chr87143264271433571714331704.72409-
chr46449745364498430644980586.53139-
chr64923616149237067492365285.17462+
chrUn_GL4563961141912489120231203.6-
chrUn_GL45638999931128110680350.604-
chrUn_GL45637093021335.91137-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512489120231893.82-
chrUn_GL45638999931128110680315.572-
chrX143482758143483522143483079297.204-
chr1312003717112003781212003755510.154+
chrX76598286765995717659911010.139-
chr87143264271433516714331709.00288-
chr46449748764498430644980586.79715-
chr129357652093577504935771826.10135-
chr99030188790302703903023905.64603-
chr64923616149237067492365285.13115+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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