DNA Damage Atlas

SRX1867562-END-seq-thymus-WT-rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705620


Source Project ID:   

PRJNA326246

Cell Type:   

Thymus


Organism:   

Mus musculus


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.034969


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482512143483629143483079210.072-
chr1454177332541783165417792016.2847-
chr1454164742541655275416531512.8002-
chr1454159052541595115415926228.0555-
chr1454157005541574935415727948.5139-
chr1454154454541555995415500416.7815-
chr1453560043535608445356024719.3229+
chr1453545303535459985354552515.0157+
chrUn_GL4563961144112585120231455.15-
chrUn_GL45638998341132910680305.647-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512527120232034.89-
chrUn_GL45638999111104710680396.663-
chrX143482624143483526143483079247.88-
chr14541570655415748454157279219.344-
chr14541590615415947254159262156.351-
chr14541547495415538054155004124.979-
chr14541775225417822454177920101.126-
chr1453560043535607235356024798.6768+
chr1453545303535458305354552597.2618+
chr1454187637541881095418789495.9359-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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