DNA Damage Atlas

SRX1867563-END-seq-thymus-WT-rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705621


Source Project ID:   

PRJNA326246

Cell Type:   

Thymus


Organism:   

Mus musculus


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.031826


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482624143483618143483079240.029-
chr1454187637541881095418789427.3581-
chr1454177383541783165417792027.0058-
chr1454157065541574875415727979.5892-
chr1454154561541555725415500432.4079-
chr1453881878538827415388221729.0028+
chr1453560040535607685356024737.9638+
chr1453545230535459385354552525.1894+
chrUn_GL4563961181513308120231098.75-
chrUn_GL45638999111132810680342.292-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512527120232034.89-
chrUn_GL45638999111104710680396.663-
chrX143482624143483526143483079247.88-
chr14541570655415748454157279219.344-
chr14541590615415947254159262156.351-
chr14541547495415538054155004124.979-
chr14541775225417822454177920101.126-
chr1453560043535607235356024798.6768+
chr1453545303535458305354552597.2618+
chr1454187637541881095418789495.9359-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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