DNA Damage Atlas

SRX1867564-END-seq-thymus-WT-rep3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705622


Source Project ID:   

PRJNA326246

Cell Type:   

Thymus


Organism:   

Mus musculus


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.036811


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482571143483610143483079222.413-
chr1454177522541782245417792041.2427-
chr1454168200541688915416868539.4015-
chr1454158893541594725415926240.4404-
chr1454156750541574845415727957.374-
chr1454154423541553805415500436.9261-
chr1453560041535607505356024744.7506+
chr1453545224535458305354552537.4994+
chrUn_GL4563961141912527120231495.94-
chrUn_GL45638998781124810680359.431-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512527120232034.89-
chrUn_GL45638999111104710680396.663-
chrX143482624143483526143483079247.88-
chr14541570655415748454157279219.344-
chr14541590615415947254159262156.351-
chr14541547495415538054155004124.979-
chr14541775225417822454177920101.126-
chr1453560043535607235356024798.6768+
chr1453545303535458305354552597.2618+
chr1454187637541881095418789495.9359-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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