DNA Damage Atlas

SRX1867565-END-seq-thymus-WT-rep4

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3705623


Source Project ID:   

PRJNA326246

Cell Type:   

Thymus


Organism:   

Mus musculus


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.036232


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482539143483526143483079216.191-
chr14541773665417851654177920102.094-
chr14541682255416904454168685121.761-
chr14541590615415960154159262201.389-
chr14541568685415756854157279212.139-
chr14541547495415559054155004151.258-
chr14535598525356072353560247123.526+
chr14535450485354585553545525104.329+
chrUn_GL4563961149012567120231154.3-
chrUn_GL45638999101104710680369.169-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512527120232034.89-
chrUn_GL45638999111104710680396.663-
chrX143482624143483526143483079247.88-
chr14541570655415748454157279219.344-
chr14541590615415947254159262156.351-
chr14541547495415538054155004124.979-
chr14541775225417822454177920101.126-
chr1453560043535607235356024798.6768+
chr1453545303535458305354552597.2618+
chr1454187637541881095418789495.9359-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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