DNA Damage Atlas

SRX231384-BLESS_HeLa_cells_data_samples_A1_and_A2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR695402


Source Project ID:   

SRP018506

Cell Type:   

HeLa


Organism:   

Homo sapiens


Layout:   

SINGLE


Instrument model:   

Illumina Genome Analyzer II


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000255


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA36643370213685544.6475-
chr1625771423257716362577142432.4138+
chr9_gl000199_random98499991479899029.9905-
chrUn_gl000226064720028.8512-
chr9_gl000199_random15792615857715837228.2811-
chr9_gl000199_random33957350643469124.4852-
chr9_gl000199_random15371015409115391822.8191-
chr9_gl000199_random73586742147374222.802+
chr9_gl000199_random72771731407297522.1753-
rDNA35579359653573321.1986+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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