DNA Damage Atlas

SRX231427-BLESS_U2OS_DRH1_transfected_with_HA-I-SceI_data_SCE

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR695441, SRR695455


Source Project ID:   

SRP018506

Cell Type:   

U2OS


Organism:   

Homo sapiens


Targeted break:   

I-SceI


Layout:   

SINGLE


Instrument model:   

Illumina Genome Analyzer II


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.057654


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1510238457910238517410238512033.563-
chr9_gl000199_random33950350843449123.1508-
chr9_gl000199_random15792615873615837415.8492+
chrUn_gl000226064720015.1703-
chr9_gl000199_random73566742117375513.2164+
rDNA36643370373685512.4989-
chr9_gl000199_random13643713714813676912.4195-
chr19_gl000208_random072818812.3161+
chr9_gl000199_random92557930919272811.6388+
chr9_gl000199_random9835099150989848.91516-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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