DNA Damage Atlas

SRX2547906-BLISS_in_mouse_embryonic_stem_cells

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5241050


Source Project ID:   

SRP099132

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.151515


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482578143483428143483102332.376-
chr3142068711142068986142068754265.253+
chr10377880643778847837788377242.161-
chr17236831742368465723683503226.002-
chr17142153671421557514215553217.315-
chr9115626496115627086115626830214.597-
chrUn_GL45639681881579111948212.258+
chr14804586228045903280458939182.484-
chr1226028722260332922602948170.307+
chr12670589806706020267059464155.656+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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