DNA Damage Atlas

SRX2547910-BLISS_in_nuclei_obtained_from_fixed_mouse_liver_biopsy

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5241054


Source Project ID:   

SRP099132

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.160906


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2693553956935619469355593405.32+
chr2225868072259065722590086317.398+
chrUn_GL456396118001255211955246.851+
chr12970610329706204997061514228.215-
chr6477670674776917147767905224.58+
chr10960771629607803296077664215.217+
chr9562233225622410256223889199.964-
chr6477708584777339447772312187.764+
chr4800025988000349980002897171.082+
chr6477383184774142547740215161.181+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1208200542082051020820302929.396-
chr7451285024512893245128740779.188-
chr13641530246415349664153243709.289-
chr1882773978827773788277548650.596-
chr5312019683120246231202321599.812-
chr9142758971427646114276283596.442+
chr16501329850137475013562592.675-
chr14631777166317806463177956585.37-
chr11968296119683025496829942582.546-
chr6670371776703764567037418570.173-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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