DNA Damage Atlas

SRX2547911-BLISS_in_nuclei_obtained_from_fixed_mouse_liver_biopsy

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5241055


Source Project ID:   

SRP099132

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM24656849632339.28-
chr12082005420820510208203501625.21-
chr74512850245128932451288391328.51-
chr136415302464153496641533181275.72-
chr91427589714276461142761061149.75+
chr146317771663178064631779941086.98-
chr165013298501374750136501083.17-
chr51376844421376850161376847631075.92-
chr119682961196830254968300861068.52-
chr51144438921144445011144442161014.09-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1208200542082051020820350929.396-
chr7451285024512893245128839779.188-
chr13641530246415349664153318709.289-
chr1882773978827773788277635650.596-
chr5312019683120246231202321599.812-
chr9142758971427646114276106596.442+
chr16501329850137475013650592.675-
chr14631777166317806463177994585.37-
chr11968296119683025496830086582.546-
chr6670371776703764567037435570.173-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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