DNA Damage Atlas

SRX2547912-BLISS_in_U2OS_cell_line_Drug-induced_DSBs

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5241056


Source Project ID:   

SRP099132

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

3uM


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.103354


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr64428222442845544282351217.35+
chr11652666326527349065268243149.612+
chr7984792989847952398479321130.206+
chr18779607137796091377960713109.861+
chr3160232733160233056160233024101.008-
chr1572500827725012927250108398.8-
chr1217143878171441351714389795.8582+
chr295433490954348979543460093.6983-
chr1651679711516809795168038193.4677+
chr220321088220321110020321109682.4647-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab