DNA Damage Atlas

SRX2547913-BLISS_in_U2OS_cell_line_Drug-induced_DSBs

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5241057


Source Project ID:   

SRP099132

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

3uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.006319


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr21471829531471831571471829553374.46+
chr71059240481059242491059240482283.21+
chr107661759776617800766177972260.72-
chr194349443143494663434946311978.13-
chr109339503293395232933950321720.97+
chr12653878326538984265389841712.41-
chr185689474568967556894741712.41+
chr21266027331266029341266027331712.41+
chr21650457231650459241650457231712.41+
chr121033253010332732103327301703.93-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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