DNA Damage Atlas

SRX2547914-BLISS_in_U2OS_cell_line_Drug-induced_DSBs

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5241058


Source Project ID:   

SRP099132

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

3uM


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 5.63956


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr117456728117456748617456748115009.4-
chr2126345048263452542634504812447.1+
chr1212243635012243655812243635012327.4+
chr14379685443797054437968547692.31+
chr206095155160951751609515517692.31+
chr61390567231390569251390567237616.15+
chr101242199551242201551242201555128.21-
chr108445996784460167844601675128.21-
chr109641129496411494964112945128.21+
chr113182121731821417318214175128.21-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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