DNA Damage Atlas

SRX4905869-GM13069_DSBC_15uMEtoposide

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078694


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

15uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.7727


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12281159541384760.1396-
rDNA0323666158.8566-
chr9_gl000199_random56658577405703024.0017+
chr9_gl000199_random33597353843440822.4769+
chrUn_gl00022011769812049511820319.8615-
chr9_gl000199_random72096743417299818.9706-
chrUn_gl00022623267674701818.4862-
rDNA37377391923783617.1889+
chr19_gl000208_random073038315.313+
rDNA35320373533677115.1157+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12281158171384760.4601-
rDNA21318766146.699-
rDNA27735293082850227.7963-
chr9_gl000199_random56658577405703023.4513+
chrUn_gl00022640077674701823.3349-
chr9_gl000199_random33615351983440822.7338+
chrUn_gl00022011769812043011820319.8605-
chrUn_gl00022012280812428712362419.5874-
chr9_gl000199_random72096741527299819.5483-
chrUn_gl00022014177714335514294117.1655+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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