DNA Damage Atlas

SRX4905870-GM13069_DSBC_15uMEtoposide

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078693


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

15uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.3442


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12140158171277757.4586+
rDNA183187143444.3104+
chr9_gl000199_random33615351983440825.2942+
chrUn_gl00022640077746702223.54-
rDNA26688294282855722.4252+
chrUn_gl00022012276112430512382021.2724+
chr9_gl000199_random984881002509899420.4207-
chrUn_gl00022011755912043011879819.2489+
chr9_gl000199_random71984741527299818.7669-
chr9_gl000199_random56475579785703018.5993+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12281158171277760.4601+
rDNA213187143446.699+
rDNA27735293082855727.7963+
chr9_gl000199_random56658577405703023.4513+
chrUn_gl00022640077674702223.3349-
chr9_gl000199_random33615351983440822.7338+
chrUn_gl00022011769812043011879819.8605+
chrUn_gl00022012280812428712382019.5874+
chr9_gl000199_random72096741527299819.5483-
chrUn_gl00022014177714335514200417.1655+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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