DNA Damage Atlas

SRX4905871-GM13069_DSBC_15uMEtoposide

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078692


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

15uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.3971


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12150172911277743.4264+
rDNA213209143440.9096+
rDNA27735295642855727.4654+
chrUn_gl00022012271812456112382017.9871+
chrUn_gl00022011747712051311990017.6955+
chr9_gl000199_random33509354013440816.9449+
rDNA35127391513573216.8918+
chr9_gl000199_random71962743087299816.7955-
chr9_gl000199_random984151002309899416.0215-
chr9_gl000199_random56413579765703015.814+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12281158171277760.4601+
rDNA213187143446.699+
rDNA27735293082855727.7963+
chr9_gl000199_random56658577405703023.4513+
chrUn_gl00022640077674702223.3349-
chr9_gl000199_random33615351983440822.7338+
chrUn_gl00022011769812043011990019.8605+
chrUn_gl00022012280812428712382019.5874+
chr9_gl000199_random72096741527299819.5483-
chrUn_gl00022014177714335514299117.1655+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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