DNA Damage Atlas

SRX4905872-GM13069_DSBC_1_5uMEtoposide

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078691


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

1.5uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.7646


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12170160091451249.5438-
rDNA333224201337.1673-
chrUn_gl00022012865913072912955818.4823-
rDNA26712297612722817.1636+
chrUn_gl00022811614511975111796616.5775+
chrUn_gl00022012296812601312382016.0419+
chr9_gl000199_random33641354013442315.7986+
chrUn_gl00022011753712062211990015.5239+
chr9_gl000199_random16779916894416830015.215+
chr9_gl000199_random72266743027299814.261-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12184159111451255.2477-
rDNA403210201344.4192-
chr9_gl000199_random56661577415703020.9841+
chrUn_gl00022012887013045312955820.0866-
chrUn_gl00022639987677702219.1521-
chr9_gl000199_random33770353923442318.6687+
chrUn_gl00022012296812453112382018.5178+
chrUn_gl00022011756812045811990018.3008+
chr9_gl000199_random72283741777299817.8091-
chrUn_gl00022811614911974611796617.6326+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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