DNA Damage Atlas

SRX4905873-GM13069_DSBC_1_5uMEtoposide

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078690


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

1.5uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.7386


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12160159111384663.1252-
rDNA53241143454.2033+
chr9_gl000199_random33770354023440819.5661+
chr9_gl000199_random56447577415703019.4191+
rDNA27741296312859219.3651-
rDNA39437442254193818.7317+
rDNA35294393373685518.4124-
chr9_gl000199_random72089743327299816.9816-
chrUn_gl00022011756812155011880716.4871+
chrUn_gl00022014173714364714299116.3282+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12184159111384655.2477-
rDNA403210143444.4192+
rDNA27741294712859226.4511-
chr9_gl000199_random56661577415703020.9841+
chrUn_gl00022012887013045312955820.0866-
chrUn_gl00022639987677702219.1521-
chr9_gl000199_random33770353923440818.6687+
chrUn_gl00022012296812453112360618.5178+
chrUn_gl00022011756812045811880718.3008+
chr9_gl000199_random72283741777299817.8091-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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