DNA Damage Atlas

SRX4905874-GM13069_DSBC_0_15uMEtoposide

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078689


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

0.15uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.9104


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12032158951293859.5351+
rDNA83245191746.1545+
rDNA27717296462875526.5953-
chr9_gl000199_random33759351983440826.5646+
rDNA35296441703685521.4186-
chrUn_gl00022639517734569521.2184+
chrUn_gl00022013550613741513690520.1226-
chrUn_gl00022012298912446412367720.0628-
chr9_gl000199_random72106740937299819.1123-
chr9_gl000199_random56656579785703018.8354+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12211157681293853.4042+
rDNA1232563191740.2717+
rDNA27717296462875530.044-
chr9_gl000199_random33769351983440826.167+
chrUn_gl00022639517734569522.8353+
chr9_gl000199_random56660579405703020.9997+
chrUn_gl000226161914420.7635+
chrUn_gl00022012298912439612367720.1494-
chr9_gl000199_random72106740937299819.9644-
chrUn_gl00022012873513048012955919.642-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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