DNA Damage Atlas

SRX4905875-GM13069_DSBC_1_5uMEtoposide

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078688


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

1.5uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.6556


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12184159181293853.1766+
rDNA403210143442.5187+
rDNA27707294712802028.6302+
rDNA62767449645622.9075+
chrUn_gl000216549212705741521.7533-
chrUn_gl00022639987741702219.3743-
chr9_gl000199_random33760353923443319.1759+
chrUn_gl00022811614911987711875118.7576-
chrUn_gl00022012887013062012955918.2529-
chrUn_gl000216535449187718.179-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12184159111293855.2477+
rDNA403210143444.4192+
rDNA27741294712802026.4511+
chr9_gl000199_random56661577415703020.9841+
chrUn_gl00022012887013045312955920.0866-
chrUn_gl00022639987677702219.1521-
chr9_gl000199_random33770353923443318.6687+
chrUn_gl00022012296812453112382018.5178+
chrUn_gl00022011756812045811991518.3008+
chr9_gl000199_random72283741777297617.8091-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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