DNA Damage Atlas

SRX4905877-GM13069_DSBC_UT

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8078686


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.667


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12340160031277755.733+
rDNA27705296702855755.0236+
rDNA39322441924203329.7342-
chrUn_gl00022012844413054812970628.4472-
chrUn_gl00022013540713757713665127.2073+
rDNA26323960426.8514+
rDNA22269256822272926.2009+
chrUn_gl000216539513393741522.5267-
chrUn_gl00021679944817198071521.1823-
chr9_gl000199_random33735351883440820.7711+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12340157701277764.0233+
rDNA27749295712855750.987+
rDNA43252460442.1133+
chrUn_gl00022013551413739113665125.8958+
chrUn_gl00022012870313050012970625.1412-
chr9_gl000199_random33786351883440822.4772+
chrUn_gl00021679963817198071521.5617-
chrUn_gl00022014166514342014213521.2466+
chrUn_gl00022640017665702219.9623-
chr19_gl000208_random064650019.2815-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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