DNA Damage Atlas

SRX4905880-GM13069_DSBC_BbvI

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR8078682


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Targeted break:   

BbvI


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.3846


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM68976902/21132.5/
chrM57685773/17436.6/
chrM21962201/15241/
chrUn_gl00022670227027/5763.41/
rDNA1293012935/5150.47/
chr9_gl000199_random7298672991/4372.87/
rDNA19501955/3778.23/
rDNA1448714492/3458.04/
chr4_gl000193_random8672186726/3018.93/
chrUn_gl000228119222119227/3018.93/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM21962201/22125/
chrM57685773/20621.8/
chrM68976902/19361/
chrM30303035/17614.4/
chrM1069310698/16606.3/
chrM1532715332/15248.3/
chrM1372113726/13366.8/
chrM64986503/12361.2/
chrM1284812853/11667.1/
chrM76087613/11483.1/
Download the Full Merged Peak List


Visualization

Manual





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