DNA Damage Atlas

SRX4905883-GM13069_DSBC_HaeIII

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR8078680


Source Project ID:   

PRJNA497476

Cell Type:   

GM13069


Organism:   

Homo sapiens


Targeted break:   

HaeIII


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.8205


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM1072710728/27742.6/
chrM21762177/19365.4/
chrM58395840/18767/
chrM1069110692/15503.2/
rDNA653654/14306.5/
chrM69596960/12402.6/
rDNA3770637707/9900.3/
chrM1305313054/9301.93/
chrM45654566/9193.13/
chrUn_gl00022441334134/8757.95/
Download the Full Peak List


Visualization

Manual





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