DNA Damage Atlas

SRX5352594-BW16_hg38_k562_vegfa_fd2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8550698


Source Project ID:   

PRJNA509652

Cell Type:   

K562


Organism:   

Homo sapiens


Targeted break:   

VEGFA_site2;gRNA sequences:GACCCCCTCCACCCCGCCTC


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

ChIP-seq (anti-FANCD2)


Others:   

position：chr6：43738559-43738578；Intensity：771.46128


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9134000165134001788134000974328.77/
chr2290929102909359629093181187.055/
rDNA4021041642171.838/
chr4120375333120376505120375868165.439/
chr9140082626140083581140083064158.062/
chr17369809743698193736981619141.795/
rDNA631475536516141.549/
chr1406265264062758840626974137.536/
rDNA124721592913739130.399/
chr6177065711770748417707179128.014/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab