DNA Damage Atlas

SRX5352595-BW15_hg38_k562_bfp_gh2ax

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8550697


Source Project ID:   

PRJNA509652

Cell Type:   

K562


Organism:   

Homo sapiens


Targeted break:   

Non-targeting (BFP)；gRNA sequences: GCTGAAGCACTGCACGCCAT


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA442004459944399180.829/
rDNA4003799209988.0338/
rDNA12400169991469948.6051/
rDNA540011599849944.9141/
rDNA31000325993179929.3435/
chr1022518400225185992251849913.346/
chr1298897200988973999889729913.346/
rDNA40200427994149913.2844/
rDNA27000301992859912.73/
rDNA22600255992409911.6602/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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