DNA Damage Atlas

SRX5352603-BW51_mre11_ipscs_nk2_wt

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8550689


Source Project ID:   

PRJNA509652

Cell Type:   

iPSCs


Organism:   

Homo sapiens


Targeted break:   

HSPB1-wt;gRNA sequences:CGACTCGAAGGTGACTGGGA


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

DISCOVER-seq


Others:   

position：chr7：75933414-75933433；Intensity：63.8638


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28047288052852456.8029/
rDNA31084326043197751.2971/
rDNA23149238092357450.5292/
chrUn_gl00022667727256700941.7303/
chrM1446552038.248/
chrUn_gl00022012975413025312999830.7491/
rDNA41588564530.1479/
chrUn_gl00022014271914326914295026.4745/
rDNA19909203342013523.3933/
chrUn_gl00022013160113205113181022.0937/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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