DNA Damage Atlas

SRX5352604-BW49_mre11_ipscs_bfp

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8550688


Source Project ID:   

PRJNA509652

Cell Type:   

iPSCs


Organism:   

Homo sapiens


Targeted break:   

Non-targeting (BFP) ；gRNA sequences:GCTGAAGCACTGCACGCCAT


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

DISCOVER-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28048288182852865.0375/
rDNA31107326013199962.9682/
rDNA23178238192357058.976/
chrUn_gl00022012975813025412999234.8233/
chrM16442450732.7027/
chrUn_gl00022667887249701129.9266/
rDNA41123427134214229.3782/
rDNA44585864325.5138/
rDNA69787508716822.5461/
chrUn_gl00022012714112752812733322.456/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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