DNA Damage Atlas

SRX5352613-BW16_hg38_k562_vegfa_nbs1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8550679


Source Project ID:   

PRJNA509652

Cell Type:   

K562


Organism:   

Homo sapiens


Targeted break:   

VEGFA_site2;gRNA sequences:GACCCCCTCCACCCCGCCTC


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

ChIP-seq (anti-NBS1)


Others:   

position：chr6：43738559-43738578；Intensity：130.89981


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022667997237700553.5383/
rDNA23205237852359247.7817/
chrUn_gl00022013274113318313297935.3692/
rDNA43784664033.0107/
chr9_gl000199_random91671920839187631.0456/
rDNA31134325393194028.8286/
rDNA14872027168927.6344/
rDNA63297449652027.2819/
rDNA28058287872853725.3437/
chrUn_gl00022012975113026813005524.7404/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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