DNA Damage Atlas

SRX5352614-BW16_hg38_k562_vegfa_gh2ax

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8550678


Source Project ID:   

PRJNA509652

Cell Type:   

K562


Organism:   

Homo sapiens


Targeted break:   

VEGFA_site2;gRNA sequences:GACCCCCTCCACCCCGCCTC


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

position：chr6：43738559-43738578；Intensity：0


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA54007999669941.1984/
rDNA4003799209934.056/
rDNA12400169991469929.26/
rDNA27200325992989919.0283/
rDNA40200445994239916.2271/
rDNA22600255992409914.796/
chr1737310600373107993731069913.3304/
chr1159333800593339995933389912.1186/
chr1212533200012533219912533209912.1186/
chr1819376200193763991937629912.1186/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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