DNA Damage Atlas

SRX5355578-Pilot_MRE11_GM

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR8553819


Source Project ID:   

PRJNA509652

Cell Type:   

B16-F10


Organism:   

Mus musculus


Targeted break:   

Pcsk9-gM gRNA sequences:GGCTGATGAGGCCGCACATG


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

DISCOVER-seq


Others:   

position：chr4：106463727-106463746；Intensity：811.07641


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr8837567688375707183756918191.183/
chr9300194530026093002135119.118/
chrY40365444036845403669383.8899/
chr687110858871130688711202447.9713/
chr410646263310646490910646390039.9725/
chr1110124568410124734110124666739.1057/
chr1469161896691621946916204432.3985/
rDNA42112435344302731.3364/
chr1037137683371393713713852830.1381/
chr1848010322480107094801051425.9072/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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