DNA Damage Atlas

SRX5355579-Pilot_MRE11_GP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8553818


Source Project ID:   

PRJNA509652

Cell Type:   

B16-F10


Organism:   

Mus musculus


Targeted break:   

Pcsk9-gP gRNA sequences:AGCAGCAGCGGCGGCAACAG


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

DISCOVER-seq


Others:   

position：chr4：106463846-106463865；Intensity：293.24907


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9300193530023423002137194.699/
chr8837567548375707983756915175.248/
chrY40365134036849403668093.9677/
chr1469161882691622046916204242.2975/
rDNA42030436124320535.2195/
chr410646286510646454010646371431.2313/
chrUn_JH58430467091687546854521.9638/
rDNA24799259572558520.3153/
chrUn_JH58430458401615025905919.7643/
chr1848009961480105284801041419.6534/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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