DNA Damage Atlas

SRX5355580-Pilot_MRE11_BFP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8553817


Source Project ID:   

PRJNA509652

Cell Type:   

B16-F10


Organism:   

Mus musculus


Targeted break:   

Non-targeting (BFP)；gRNA sequences: GCTGAAGCACTGCACGCCAT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

DISCOVER-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9300194230023423002140286.405/
chr8837567468375707183756907182.777/
chrY40365404036839403668886.9185/
rDNA42247435344280232.9685/
chrUn_JH58430466988687446859627.1835/
chr610331451610331481110331466226.9685/
chr1848010322480106804801050025.1857/
rDNA67188664808523.1667/
chr1469161753691625526916204421.2418/
chr820328682203294212032891418.6602/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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