DNA Damage Atlas

SRX5821819-HeLa_UT_N2_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9045289


Source Project ID:   

SRP197975

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq X Ten


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000123


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72071736997299875.1392-
chr9_gl000199_random33872348893439057.6428+
chr19_gl000208_random072749636.7588-
chrUn_gl00022630287849501534.9962+
chrUn_gl00021679769815668073133.8269-
chr9_gl000199_random44095451974492832.4474+
chrUn_gl00021611782601155231.6744-
chrUn_gl00022811584711974111863927.0403+
chrUn_gl00021614471914592714549425.0044-
chrUn_gl00021675311763567590122.0611+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72147736087299859.4172-
chr9_gl000199_random33872348893439048.2698+
chr19_gl000208_random066549634.3252-
chrUn_gl00021680081812518073132.4462-
chrUn_gl00022638957601501531.7067+
chrUn_gl00021611782601155228.064-
chrUn_gl000226059120227.914-
chr9_gl000199_random44095451974492823.5779+
chrUn_gl00022811612011974111863921.6505+
chr9_gl000199_random56445576855706519.6122+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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